Stem-loop cja-mir-103a-1

Accession

MI0031884

Description

Callithrix jacchus cja-mir-103a-1 precursor miRNA

Sequence

ccccaccucagcagagcugcgucuuugugcuuucagcuucuuuacagugcugccuuguagcauucaggucaAGCAGCAUUGUACAGGGCUAUgaaagaaccaagaaugggcugcccuugggg
(((((.....(((..(((...((((.((.(((((((((.((.(((((((((((.(((.(.(.....).))))))))))))))).)))))..)))))).)).))))...))))))...)))))

Structure

     ccuca   ga   gcg    u  g      --   u  u           c   u g a 
cccca     gca  gcu   ucuu gu cuuuca  gcu cu uacagugcugc uug a c u
|||||     |||  |||   |||| || ||||||  ||| || ||||||||||| ||| | | u
ggggu     cgu  cgg   agaa ca gaaagU  CGG GA AUGUUACGACG Aac u g c
     --ucc   --   gua    c  a      AU   -  C           -   - g a 

Annotation confidence Not enough data

Genome context

chr5: 9746810-9746931 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-103a-1

Mature cja-miR-103a

• Accession: MIMAT0039369
• Description: Callithrix jacchus cja-miR-103a mature miRNA
• Sequence: 72 - AGCAGCAUUGUACAGGGCUAU - 92
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596