Stem-loop cja-mir-181d

Accession

MI0031862

Description

Callithrix jacchus cja-mir-181d precursor miRNA

Sequence

cccccuccccuaagccacagccaaggucacaaucAACAUUCAUUGUUGUCGGUGGGUugugaggaccgaggccagacccaccgggggaugaaugucacuguggcugggccagacauggcuuaaggggaauaggg
.(((.((((((((((((..(((..(((((((....(((((((((....((((((((((.((.(........)))))))))))))..)))))))))...))))))).)))......)))))).))))))...)))

Structure

c   --c      -      ----ca   aa       aucA         GUUG          g  a gac 
 ccc   uccccu aagcca      gcc  ggucaca    ACAUUCAUU    UCGGUGGGUu ug g   c
 |||   |||||| ||||||      |||  |||||||    |||||||||    |||||||||| || |    
 ggg   agggga uucggu      cgg  ucggugu    uguaaguag    ggccacccag ac c   g
-   aua      a      acagac   -g       -cac         --gg          -  - gga 

Annotation confidence Not enough data

Genome context

chr22: 13112014-13112147 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-181d

Mature cja-miR-181d

• Accession: MIMAT0039347
• Description: Callithrix jacchus cja-miR-181d mature miRNA
• Sequence: 35 - AACAUUCAUUGUUGUCGGUGGGU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857