Stem-loop cja-let-7b

Accession

MI0031834

Description

Callithrix jacchus cja-let-7b precursor miRNA

Literature search

1 open access papers mention cja-let-7b
(1 sentences)

Sequence

gguuggugggcccucccgcagggcgaggccgggccuggcggggUGAGGUAGUAGGUUGUGUGGUUucagggcagugauguugccccucagaagauaacuauacaaccuacugccuucccugaggagcccagugacgugaccccacgggagggcugccucc
((..(((((.((((((((..(((((..((.((((((..(((((.(((((((((((((((((((((((.((((((.....)))))).......)).)))))))))))))))))))))))))).)).)))).))..))...)))..))))))))))))).))

Structure

  uu     g        ca   ---  ag  c    -  gg     U                     -  ------a      u 
gg  ggugg cccucccg  ggg   cg  gc gggc cu  cgggg GAGGUAGUAGGUUGUGUGGUU uc       gggcag g
||  ||||| ||||||||  |||   ||  || |||| ||  ||||| ||||||||||||||||||||| ||       |||||| a
cc  ccguc gggagggc  ccc   gc  ug cccg gg  guccc uuccgucauccaacauaucaa ag       cccguu u
  -u     -        ac   agu  ag  a    a  -a     -                     u  aagacuc      g 

Annotation confidence Not enough data

Genome context

chr1: 205840614-205840773 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-let-7b

Mature cja-let-7b

• Accession: MIMAT0039325
• Description: Callithrix jacchus cja-let-7b mature miRNA
• Sequence: 44 - UGAGGUAGUAGGUUGUGUGGUU - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596