Stem-loop rno-mir-466b-4

Accession

MI0031780

Description

Rattus norvegicus rno-mir-466b-4 precursor miRNA

Literature search

15 open access papers mention rno-mir-466b-4
(113 sentences)

Sequence

996 reads, 2 reads per million, 266 experiments

cauguguguaUAUGUGUGUGUGUAUGUCCAUGuguguauaugauuauacAUAUACAUACACACAUACACAuauacgcaagca
..(((((((((.(((((((((((((((..(((((((((......)))))))))))))))))))))))).)))))))))....

Structure

--ca         A               CC         ua 
    uguguguaU UGUGUGUGUGUAUGU  AUGugugua  u
    ||||||||| |||||||||||||||  |||||||||   
    acgcauauA ACAUACACACAUACA  UAUAcauau  g
acga         C               --         ua 

Annotation confidence Not enough data

Genome context

chr17: 72066536-72066617 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-466b-4

Mature rno-miR-466b-5p

• Accession: MIMAT0005278
• Description: Rattus norvegicus rno-miR-466b-5p mature miRNA
• Sequence: 11 - UAUGUGUGUGUGUAUGUCCAUG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-466b-4-3p

• Accession: MIMAT0037262
• Description: Rattus norvegicus rno-miR-466b-4-3p mature miRNA
• Sequence: 50 - AUAUACAUACACACAUACACA - 70
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249