Stem-loop ssc-mir-9828-3

Accession

MI0031597

Description

Sus scrofa ssc-mir-9828-3 precursor miRNA

Sequence

augugggagccgcccggcuucccgagagacaccugguaugaaugccugaucgaaagagaggucgaguGGUUUCAGGCCGGUCGCUCGAuagaaagaaa
....(((((((....)))))))((((.(((...((((.((((.(((...((((........))))..))))))).))))))).))))...........

Structure

augugggagccgcccggcuucc    a   acc    a    u   uga    aag 
                      cgag gac   uggu ugaa gcc   ucga   a
                      |||| |||   |||| |||| |||   ||||    
                      GCUC CUG   GCCG ACUU UGG   agcu   g
-----------aaagaaagauA    G   ---    G    -   -ug    gga 

Annotation confidence Not enough data

Genome context

chr12: 61824382-61824479 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-9828-3

Mature ssc-miR-9828-3p

• Accession: MIMAT0037046
• Description: Sus scrofa ssc-miR-9828-3p mature miRNA
• Sequence: 68 - GGUUUCAGGCCGGUCGCUCGA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100