Stem-loop gra-MIR827b

Accession

MI0031497

Description

Gossypium raimondii gra-MIR827b precursor miRNA

Literature search

1 open access papers mention gra-MIR827b
(2 sentences)

Sequence

21373 reads, 4524.0 reads per million, 13 experiments

guugaaugugUUUGUUUAUGGUCAUCUAAGCcauuuuucaucucgccaauucuuuguucaagcaguuuuuggauaaucgaaccgauagaauacacccgcggaaaugauguUUAGAUGACCAUCAACAAACAAcuucauc
..((((..((((((((.((((((((((((((((((((......(((..((((((((((((((.....)))))))))..........)))))......)))))))))..)))))))))))))).))))))))..))))..

Structure

gu    ug        U              --      ucaucu   ----ca     ----------         c 
  ugaa  ugUUUGUU AUGGUCAUCUAAGC  cauuuu      cgc      auucu          uuguucaag a
  ||||  |||||||| ||||||||||||||  ||||||      |||      |||||          ||||||||| g
  acuu  ACAAACAA UACCAGUAGAUUug  guaaag      gcg      uaaga          aauagguuu u
cu    cA        C              ua      ------   cccaca     uagccaagcu         u 

Annotation confidence High

Genome context

chr11: 55877977-55878115 [+]

Mature gra-miR827b-5p

• Accession: MIMAT0036968
• Description: Gossypium raimondii gra-miR827b-5p mature miRNA
• Sequence: 11 - UUUGUUUAUGGUCAUCUAAGC - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR827b-3p

• Accession: MIMAT0055559
• Description: Gossypium raimondii gra-miR827b-3p mature miRNA
• Sequence: 111 - UUAGAUGACCAUCAACAAACAA - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629