Stem-loop ppy-mir-515-3

Accession

MI0031101

Description

Pongo pygmaeus ppy-mir-515-3 precursor miRNA

Literature search

1 open access papers mention ppy-mir-515-3
(2 sentences)

Sequence

uuggagugagaagaucucauguagucaUUCUCCAAAAGAAAGCACUUUCUGuugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugagaaaaaccacguugaaguug
((((.(((.(....(((((..((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))..)))))....)))).)))).....

Structure

-----    a   a aaga     ug    c  U           A    UU      gu 
     uugg gug g    ucuca  uagu aU CUCCAAAAGAA GCAC  UCUGuu  c
     |||| ||| |    |||||  |||| || ||||||||||| ||||  ||||||  u
     aguu cac c    agagu  guca UG GAGGUUUUCUU CGUG  AGacga  g
guuga    g   - aaaa     uu    U  C           C    --      aa 

Annotation confidence Not enough data

Genome context

chr19: 55453959-55454073 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ppy-mir-515-3

Mature ppy-miR-515-5p

• Accession: MIMAT0015943
• Description: Pongo pygmaeus ppy-miR-515-5p mature miRNA
• Sequence: 28 - UUCUCCAAAAGAAAGCACUUUCUG - 51
• Evidence: not_experimental

Mature ppy-miR-515-3p

• Accession: MIMAT0015944
• Description: Pongo pygmaeus ppy-miR-515-3p mature miRNA
• Sequence: 65 - GAGUGCCUUCUUUUGGAGCGUU - 86
• Evidence: not_experimental

References

1. PubMed ID: 24126940
   Exploration of miRNA families for hypotheses generation
   "Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
   "Sci Rep (2013) 3:2940