Stem-loop gma-MIR319o

Accession

MI0031039

Description

Glycine max gma-MIR319o precursor miRNA

Literature search

17 open access papers mention gma-MIR319o
(43 sentences)

Sequence

7022214 reads, 17119.0 reads per million, 177 experiments

gagagugaAGGAGCUUCCUUCAGCCCAUGcauggauucaagggauuaaaggguugcuggaguaucugcugacucauucauacacacacaguacguagugcuuucaaauugcuaguguaauugugugaaugaagcaggugauauuuugcaccccucuuuucucugugcuUGGACUGAAGGGGAGCUCCUUCuuucu
.((((.(((((((((((((((((.(((.(((((((...(((((......((((.((.((((((((..(((..(((((((((((...(((.((.(((((........))))))).)))...)))))))))))..)))..)))))))))))))))))))...))))))).))).))))).)))))))))))).))))

Structure

g    u            -     C   U       uuc     auuaaa    u  u        ug   ac           cac   g  c     gcu 
 agag gaAGGAGCUUCC UUCAG CCA Gcaugga   aaggg      gggu gc ggaguauc  cug  ucauucauaca   aca ua guagu   u
 |||| |||||||||||| ||||| ||| |||||||   |||||      |||| || ||||||||  |||  |||||||||||   ||| || |||||    
 ucuu CUUCCUCGAGGG AAGUC GGU cgugucu   uucuc      ccca cg uuuuauag  gac  aguaagugugu   ugu au cguua   u
-    u            G     A   u       cuu     ------    -  -        ug   ga           uaa   g  -     aac 

Annotation confidence High

Genome context

chr6: 11459824-11460018 [-]

Mature gma-miR319o-5p

• Accession: MIMAT0054446
• Description: Glycine max gma-miR319o-5p mature miRNA
• Sequence: 9 - AGGAGCUUCCUUCAGCCCAUG - 29
• Evidence: experimental ; unknown

Mature gma-miR319o-3p

• Accession: MIMAT0036377
• Description: Glycine max gma-miR319o-3p mature miRNA
• Sequence: 169 - UGGACUGAAGGGGAGCUCCUUC - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153