Stem-loop dvi-mir-9541b

Accession

MI0030967

Description

Drosophila virilis dvi-mir-9541b precursor miRNA

Sequence

AAGCACAGUAGUUCUCCUAAACcgguuuucuuuuuaugcucgGUUAAGAGAUCUACUAUGCUAAc
.((((.(((((.((((...(((((((...........)).)))))..)))).))))).))))...

Structure

--A    C     U    CUA     -  uuuc 
   AGCA AGUAG UCUC   AACcg gu    u
   |||| ||||| ||||   ||||| ||    u
   UCGU UCAUC AGAG   UUGgc cg    u
cAA    A     U    -AA     u  uauu 

Annotation confidence Not enough data

Genome context

scaffold_12970: 9428404-9428468 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9541b

Mature dvi-miR-9541b-5p

• Accession: MIMAT0039283
• Description: Drosophila virilis dvi-miR-9541b-5p mature miRNA
• Sequence: 1 - AAGCACAGUAGUUCUCCUAAAC - 22
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9541b-3p

• Accession: MIMAT0039284
• Description: Drosophila virilis dvi-miR-9541b-3p mature miRNA
• Sequence: 43 - GUUAAGAGAUCUACUAUGCUAA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250