miRBase entry: dvi-mir-9708c

Stem-loop dvi-mir-9708c


Accession
MI0030962
Description
Drosophila virilis dvi-mir-9708c precursor miRNA


Sequence

UGAGCACAGCUAAACAUAUAAUuuuuuuuuuacaaguucuUAUGUGUGUUAGCUGGGCUCAUGa
(((((.(((((((((((((((...(((......)))...)))))))).))))))).)))))...

Structure
---     A       -        Uuu   uu 
   UGAGC CAGCUAA ACAUAUAA   uuu  u
   ||||| ||||||| ||||||||   |||   
   ACUCG GUCGAUU UGUGUAUu   gaa  u
aGU     G       G        cuu   ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_13042: 2032606-2032669 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from dvi-mir-9708c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9708c-5p

Accession MIMAT0039273
Description Drosophila virilis dvi-miR-9708c-5p mature miRNA
Sequence 1 - UGAGCACAGCUAAACAUAUAAU - 22
Evidence experimental
Illumina [1]

Mature dvi-miR-9708c-3p

Accession MIMAT0039274
Description Drosophila virilis dvi-miR-9708c-3p mature miRNA
Sequence 41 - UAUGUGUGUUAGCUGGGCUCAUG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250