Stem-loop dse-mir-975

Accession

MI0030885

Description

Drosophila sechellia dse-mir-975 precursor miRNA

Sequence

uugaguuuuugauuUUAAACACUCCCUACAUCCUGUauguguuuugcauccgaUACAGUUGUAGGAGUCGUUUGCAgucagagauuucaca
..((((((((((((.((((((((((.((((..((((((((((...))))...)))))).))))))))).))))).))))))))))))....

Structure

--uu            U     -     C    UC      ---    u 
    gaguuuuugauu UAAAC ACUCC UACA  CUGUau   gugu  
    |||||||||||| ||||| ||||| ||||  ||||||   |||| u
    uuuagagacugA GUUUG UGAGG AUGU  GACAUa   uacg  
acac            C     C     -    -U      gcc    u 

Annotation confidence Low

Genome context

scaffold_8: 1735124-1735214 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-975

Mature dse-miR-975-5p

• Accession: MIMAT0039147
• Description: Drosophila sechellia dse-miR-975-5p mature miRNA
• Sequence: 15 - UUAAACACUCCCUACAUCCUGU - 36
• Evidence: experimental ; Illumina [1]

Mature dse-miR-975-3p

• Accession: MIMAT0039148
• Description: Drosophila sechellia dse-miR-975-3p mature miRNA
• Sequence: 54 - UACAGUUGUAGGAGUCGUUUGCA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250