miRBase entry: dsi-mir-972

Stem-loop dsi-mir-972

Accession

MI0030854

Description

Drosophila simulans dsi-mir-972 precursor miRNA

Sequence

agaaugauagugaauugcUAAAUAUUUUCUUUGUAUAAAugacuuuuaacaUUUGUACAAUAUUAAUAUUUaaacauuucucgaaucaaaguaugccacauca
....((((.(.(((.((.((((((((....(((((((((((........)))))))))))....))))))))..)).))).)..))))...............

Structure

-----------agaa    -a u   u  -c        UUCU           acu 
               ugau  g gaa ug  UAAAUAUU    UUGUAUAAAug   u
               ||||  | ||| ||  ||||||||    |||||||||||    
               acua  c cuu ac  aUUUAUAA    AACAUGUUUac   u
acuacaccguaugaa    ag u   u  aa        UUAU           aau

Annotation confidence Not enough data

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Genome context

chrX: 15010940-15011042 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-972

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-972-5p

Accession	MIMAT0039111
Description	Drosophila simulans dsi-miR-972-5p mature miRNA
Sequence	19 - UAAAUAUUUUCUUUGUAUAAA - 39
Evidence	experimental Illumina [1]

Mature dsi-miR-972-3p

Accession	MIMAT0039112
Description	Drosophila simulans dsi-miR-972-3p mature miRNA
Sequence	52 - UUUGUACAAUAUUAAUAUUU - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250