Stem-loop chi-mir-873

Accession

MI0030835

Description

Capra hircus chi-mir-873 precursor miRNA

Literature search

10 open access papers mention chi-mir-873
(90 sentences)

Sequence

2762 reads, 9.0 reads per million, 33 experiments

uaaguuugugugcauuUGCAGGAACUUGUGAGUCUCCUauugaacaugaacagGAGGCUGAUGAGUUCCCGGGAAcacccacaaaucuuccuacucauu
...(((((((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).))))))).............

Structure

----------uaa       u ca   G A         G        a  ga 
             guuugug g  uuU C GGAACUUGU AGUCUCCU uu  a
             ||||||| |  ||| | ||||||||| |||||||| ||  c
             uaaacac c  AAG G CCUUGAGUA UCGGAGga aa  a
uuacucauccuuc       c ac   G C         G        c  gu 

Annotation confidence High

Genome context

chr8: 15366430-15366528 [+]

Mature chi-miR-873-5p

• Accession: MIMAT0036294
• Description: Capra hircus chi-miR-873-5p mature miRNA
• Sequence: 17 - UGCAGGAACUUGUGAGUCUCCU - 38
• Evidence: experimental ; Illumina [1]

Mature chi-miR-873-3p

• Accession: MIMAT0036295
• Description: Capra hircus chi-miR-873-3p mature miRNA
• Sequence: 54 - GAGGCUGAUGAGUUCCCGGGAA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40