Stem-loop chi-mir-660

Accession

MI0030828

Description

Capra hircus chi-mir-660 precursor miRNA

Literature search

4 open access papers mention chi-mir-660
(7 sentences)

Sequence

120342 reads, 390.0 reads per million, 36 experiments

cugcuccuucucccgUACCCAUUGCAUAUCGGAGCUGUgaaugcucaaagcACCUCCUAUGUGCAUGGAUUacaggag
.........((((.(((.((((.((((((.((((.(((...........))).)))).))))))))))..))).))))

Structure

cugcuccuu    c   -C    U      C    C   gaau 
         cucc gUA  CCAU GCAUAU GGAG UGU    g
         |||| |||  |||| |||||| |||| |||    c
         gagg caU  GGUA CGUGUA CCUC Acg    u
---------    a   UA    -      U    C   aaac 

Annotation confidence Medium

Genome context

chrX: 82601027-82601104 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-660

Mature chi-miR-660-5p

• Accession: MIMAT0036284
• Description: Capra hircus chi-miR-660-5p mature miRNA
• Sequence: 16 - UACCCAUUGCAUAUCGGAGCUGU - 38
• Evidence: experimental ; Illumina [1]

Mature chi-miR-660-3p

• Accession: MIMAT0058981
• Description: Capra hircus chi-miR-660-3p mature miRNA
• Sequence: 52 - ACCUCCUAUGUGCAUGGAUU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40