Stem-loop chi-mir-502b

Accession

MI0030815

Description

Capra hircus chi-mir-502b precursor miRNA

Literature search

1 open access papers mention chi-mir-502b
(2 sentences)

Sequence

2624 reads, 9.0 reads per million, 36 experiments

gcuccccucucUAAUUCUUGCUCCCCAGGUGAGagugcuuugugaaugcaaUCCACCUGGGCAAGGAUUCUGAaugugagagc
((((.((..((.(((((((((...(((((((.((.(((.........))).))))))))))))))))))..))..).).))))

Structure

    c - uc  -U         UCC       A  g   uuu 
gcuc c c  uc  AAUUCUUGC   CCAGGUG Ga ugc   g
|||| | |  ||  |||||||||   ||||||| || |||   u
cgag g g  AG  UUAGGAACG   GGUCCAC CU acg   g
    a u ua  UC         ---       -  a   uaa 

Annotation confidence High

Genome context

chrX: 82604898-82604980 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-502b

Mature chi-miR-502b-5p

• Accession: MIMAT0036266
• Description: Capra hircus chi-miR-502b-5p mature miRNA
• Sequence: 12 - UAAUUCUUGCUCCCCAGGUGAG - 33
• Evidence: experimental ; Illumina [1]

Mature chi-miR-502b-3p

• Accession: MIMAT0036267
• Description: Capra hircus chi-miR-502b-3p mature miRNA
• Sequence: 52 - UCCACCUGGGCAAGGAUUCUGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40