Stem-loop chi-mir-499

Accession

MI0030812

Description

Capra hircus chi-mir-499 precursor miRNA

Literature search

20 open access papers mention chi-mir-499
(111 sentences)

Sequence

573431 reads, 1574.0 reads per million, 36 experiments

ucuguccccugcacccggggcgggcggcugUUAAGACUUGCAGUGAUGUUUaacuccucuccacgugAACAUCACAGCAAGUCUGUGCUgcuucccguccccacgcugccugggcagggu
((((.(((..(((.(.((((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).))))))))...).)))..)))))))..

Structure

--    u   cu   c --c        c   u  UA        A          acucc 
  ucug ccc  gca c   ggggcggg ggc gU  AGACUUGC GUGAUGUUUa     u
  |||| |||  ||| |   |||||||| ||| ||  |||||||| ||||||||||     c
  ggac ggg  cgu g   cccugccc ucg CG  UCUGAACG CACUACAAgu     u
ug    -   uc   c cac        u   U  UG        A          gcacc 

Annotation confidence High

Genome context

chr13: 65701240-65701359 [+]

Mature chi-miR-499-5p

• Accession: MIMAT0036261
• Description: Capra hircus chi-miR-499-5p mature miRNA
• Sequence: 31 - UUAAGACUUGCAGUGAUGUUU - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-499-3p

• Accession: MIMAT0036262
• Description: Capra hircus chi-miR-499-3p mature miRNA
• Sequence: 68 - AACAUCACAGCAAGUCUGUGCU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40