miRBase entry: chi-mir-497

Stem-loop chi-mir-497


Accession
MI0030811
Description
Capra hircus chi-mir-497 precursor miRNA
Gene family
MIPF0000231; mir-497


Sequence

ccaccccaguccugcucccgccccAGCAGCACACUGUGGUUUGUACggcacuguggccacgUCCAAACCACACUGUGAUGUUagagcgagggugggggaggcgccgcugaggc
...((.(((((((.(((((((((..((((((((((((((((((.(((((......)))..)).)))))))))..))).))))...))..))))))))))))....)))).)).

Structure
cca  c    ----   g         cA  ---    -   --         U  --   ac 
   cc cagu    ccu cucccgccc  GC   AGCA CAC  UGUGGUUUG AC  ggc  u
   || ||||    ||| |||||||||  ||   |||| |||  ||||||||| ||  |||   
   gg gucg    gga ggggguggg  cg   UUGU GUG  ACACCAAAC Ug  ccg  g
--c  a    ccgc   -         ag  aga    A   UC         C  ca   gu 


Annotation confidence Not enough data
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Genome context
chr19: 27448017-27448129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-497
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-497-5p

Accession MIMAT0036259
Description Capra hircus chi-miR-497-5p mature miRNA
Sequence 25 - AGCAGCACACUGUGGUUUGUAC - 46
Evidence experimental
Illumina [1]

Mature chi-miR-497-3p

Accession MIMAT0036260
Description Capra hircus chi-miR-497-3p mature miRNA
Sequence 62 - UCCAAACCACACUGUGAUGUU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40