Stem-loop chi-mir-494

Accession

MI0030808

Description

Capra hircus chi-mir-494 precursor miRNA

Literature search

31 open access papers mention chi-mir-494
(147 sentences)

Sequence

12871 reads, 42.0 reads per million, 36 experiments

uuuuugaccagggcuuaucuucgauacuugaaggagAGGUUAUCCGUGUUGUCUUCUCUuuauuuaugaUGAAACAUACACGGGAAACCUCUuuuuuaguaucaaaucccacc
..........(((.........((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))....)))...

Structure

uuuuugacca   cuuaucuuc      u            A       -   C   -  Uuu 
          ggg         gauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
          |||         |||||| |||||||||||| ||||||| ||| ||| ||   u
          ccc         cuauga uuuuuUCUCCAA GGGCACA ACA AAG ag   u
-------cca   -----uaaa      -            A       U   -   U  uau 

Annotation confidence High

Genome context

chr21: 67108251-67108363 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from chi-mir-494

Mature chi-miR-494-5p

• Accession: MIMAT0058973
• Description: Capra hircus chi-miR-494-5p mature miRNA
• Sequence: 37 - AGGUUAUCCGUGUUGUCUUCUCU - 59
• Evidence: experimental ; Illumina [1]

Mature chi-miR-494-3p

• Accession: MIMAT0036255
• Description: Capra hircus chi-miR-494-3p mature miRNA
• Sequence: 70 - UGAAACAUACACGGGAAACCUCU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40