Stem-loop chi-mir-487b

Accession

MI0030804

Description

Capra hircus chi-mir-487b precursor miRNA

Literature search

11 open access papers mention chi-mir-487b
(18 sentences)

Sequence

17286 reads, 54.0 reads per million, 36 experiments

uuucuuucccgugcuaaccuuugguacuuggagAGUGGUUAUCCCUGUCCUGUUcguuuuacucaugucgAAUCGUACAGGGUCAUCCACUUuuucaguaucaagagcgcagaccgua
..........(((((....(((((((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))))))))))))........

Structure

uuucuuuccc     aacc         u         UUAU      C U     uuuua 
          gugcu    uuugguacu ggagAGUGG    CCCUGU C GUUcg     c
          |||||    ||||||||| |||||||||    |||||| | |||||      
          cgcga    gaacuauga uuuUUCACC    GGGACA G UAAgc     u
--augccaga     ----         c         UACU      U C     uguac 

Annotation confidence High

Genome context

chr21: 67122099-67122216 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from chi-mir-487b

Mature chi-miR-487b-5p

• Accession: MIMAT0036248
• Description: Capra hircus chi-miR-487b-5p mature miRNA
• Sequence: 34 - AGUGGUUAUCCCUGUCCUGUU - 54
• Evidence: experimental ; Illumina [1]

Mature chi-miR-487b-3p

• Accession: MIMAT0036249
• Description: Capra hircus chi-miR-487b-3p mature miRNA
• Sequence: 71 - AAUCGUACAGGGUCAUCCACUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40