Stem-loop chi-mir-487a

Accession

MI0030803

Description

Capra hircus chi-mir-487a precursor miRNA

Literature search

4 open access papers mention chi-mir-487a
(8 sentences)

Sequence

742 reads, 3.0 reads per million, 33 experiments

guuagccuuugguacuugaagaGUGGUUAUCCCUGCUGUGUUCGcuguauuuaugacgAAUCAUACAGGGACAUCCAGUUUuucaguaucaaauacugcucug
..(((..(((((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).)))))))))..))).....

Structure

---gu   cc         u     G   UUA      C    -    - ugu 
     uag  uuugguacu gaaga UGG   UCCCUG UGUG UUCG c   a
     |||  ||||||||| ||||| |||   |||||| |||| |||| |   u
     guc  aaacuauga uuUUU ACC   AGGGAC AUAC AAgc g   u
gucuc   au         c     G   UAC      -    U    a uau 

Annotation confidence High

Genome context

chr21: 67127794-67127896 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-487a

Mature chi-miR-487a-5p

• Accession: MIMAT0036246
• Description: Capra hircus chi-miR-487a-5p mature miRNA
• Sequence: 23 - GUGGUUAUCCCUGCUGUGUUCG - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-487a-3p

• Accession: MIMAT0036247
• Description: Capra hircus chi-miR-487a-3p mature miRNA
• Sequence: 59 - AAUCAUACAGGGACAUCCAGUUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40