Stem-loop chi-mir-3958

Accession

MI0030780

Description

Capra hircus chi-mir-3958 precursor miRNA

Literature search

1 open access papers mention chi-mir-3958
(2 sentences)

Sequence

72374 reads, 227.0 reads per million, 36 experiments

cuggucugagauguucgaaaggAGGUUGUCCGUGAUGUAUUUGCUuuauuuguggcAGAUAUUGCACGGUUGAUCUCUUuucuucaucaaaugccuucuugaag
..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).))).........

Structure

-------cu   c ga    uuc           GU     AU         uua 
         ggu u  gaug   gaaaggAGGUU  CCGUG  GUAUUUGCU   u
         ||| |  ||||   |||||||||||  |||||  |||||||||    
         ccg a  cuac   cuuUUCUCUAG  GGCAC  UAUAGAcgg   u
gaaguucuu   u aa    -uu           UU     GU         ugu 

Annotation confidence High

Genome context

chr21: 67113857-67113960 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from chi-mir-3958

Mature chi-miR-3958-5p

• Accession: MIMAT0036205
• Description: Capra hircus chi-miR-3958-5p mature miRNA
• Sequence: 23 - AGGUUGUCCGUGAUGUAUUUGCU - 45
• Evidence: experimental ; Illumina [1]

Mature chi-miR-3958-3p

• Accession: MIMAT0036206
• Description: Capra hircus chi-miR-3958-3p mature miRNA
• Sequence: 57 - AGAUAUUGCACGGUUGAUCUCUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40