Stem-loop chi-mir-377

Accession

MI0030772

Description

Capra hircus chi-mir-377 precursor miRNA

Literature search

13 open access papers mention chi-mir-377
(98 sentences)

Sequence

817 reads, 3.0 reads per million, 35 experiments

aagagguaucuuggugcucaggcccugcugacauuugauccuugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauuuauguugAAUCACACAAAGGCAACUUUUGuuugaguaucaaauccugcuuggga
....(((((....)))))....(((.((....(((((((.(((((((((((((((((.(((((((.(((((.........).)))))))).))).))))))))))))))))).)))))))...))..))).

Structure

aagagguaucuuggugcucagg   -u  ugac       c                 C   -    A    - uuu 
                      ccc  gc    auuugau cuugagcAGAGGUUGCC UUG GUGA UUCg c   a
                      |||  ||    ||||||| ||||||||||||||||| ||| |||| |||| |   u
                      ggg  cg    uaaacua gaguuuGUUUUCAACGG AAC CACU AAgu g   u
---------------------a   uu  -ucc       u                 A   A    -    u uau 

Annotation confidence High

Genome context

chr21: 67139994-67140124 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-377

Mature chi-miR-377-5p

• Accession: MIMAT0058969
• Description: Capra hircus chi-miR-377-5p mature miRNA
• Sequence: 48 - AGAGGUUGCCCUUGGUGAAUUC - 69
• Evidence: experimental ; Illumina [1]

Mature chi-miR-377-3p

• Accession: MIMAT0036192
• Description: Capra hircus chi-miR-377-3p mature miRNA
• Sequence: 85 - AAUCACACAAAGGCAACUUUUG - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40