Stem-loop chi-mir-376d

Accession

MI0030770

Description

Capra hircus chi-mir-376d precursor miRNA

Literature search

1 open access papers mention chi-mir-376d
(1 sentences)

Sequence

7010 reads, 22.0 reads per million, 36 experiments

gggauccauccucuuugguauuuaaaagGUAGAUUUUCCUUCUAUGGUUacggguuuggugauuaAUCAUAGAGGAAAAUCCACAUuuucaguaucaaaugcugcuuugg
((((....)))).(((((((((.((((.((.(((((((((.(((((((((...(((....))))))))))))))))))))).)).)))).)))))))))...........

Structure

gggauccauccuc         u    g  A         U         cgg   u 
             uuugguauu aaaa GU GAUUUUCCU CUAUGGUUa   guu g
             ||||||||| |||| || ||||||||| |||||||||   |||  
             aaacuauga uuuU CA CUAAAAGGA GAUACUAau   uag g
--gguuucgucgu         c    A  C         -         ---   u 

Annotation confidence High

Genome context

chr21: 67117225-67117334 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from chi-mir-376d

Mature chi-miR-376d-5p

• Accession: MIMAT0058968
• Description: Capra hircus chi-miR-376d-5p mature miRNA
• Sequence: 29 - GUAGAUUUUCCUUCUAUGGUU - 49
• Evidence: experimental ; Illumina [1]

Mature chi-miR-376d-3p

• Accession: MIMAT0036189
• Description: Capra hircus chi-miR-376d-3p mature miRNA
• Sequence: 66 - AUCAUAGAGGAAAAUCCACAU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40