Stem-loop chi-mir-376b

Accession

MI0030768

Description

Capra hircus chi-mir-376b precursor miRNA

Literature search

8 open access papers mention chi-mir-376b
(64 sentences)

Sequence

19995 reads, 64.0 reads per million, 36 experiments

ucuuucuuugguauuuaaaagGUGGAUAUUCCUUCUAUGUUUacgugauucauagauaAUCAUAGAGGAAAAUCCAUGUUUucaguaucaaaugcuacucugga
......(((((((((.((((.((((((.(((((.(((((.(((.(((...)))...))).)))))))))).)))))).)))).)))))))))............

Structure

------ucuuuc         u    g      A     U     U   --c   a 
            uuugguauu aaaa GUGGAU UUCCU CUAUG UUa   gug  
            ||||||||| |||| |||||| ||||| ||||| |||   ||| u
            aaacuauga uUUU UACCUA AAGGA GAUAC Aau   uac  
aggucucaucgu         c    G      A     -     U   aga   u 

Annotation confidence Medium

Genome context

chr21: 67117609-67117712 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from chi-mir-376b

Mature chi-miR-376b-5p

• Accession: MIMAT0036185
• Description: Capra hircus chi-miR-376b-5p mature miRNA
• Sequence: 22 - GUGGAUAUUCCUUCUAUGUUU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-miR-376b-3p

• Accession: MIMAT0036186
• Description: Capra hircus chi-miR-376b-3p mature miRNA
• Sequence: 59 - AUCAUAGAGGAAAAUCCAUGUUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40