Stem-loop chi-mir-365

Accession

MI0030763

Description

Capra hircus chi-mir-365 precursor miRNA

Literature search

23 open access papers mention chi-mir-365
(87 sentences)

Sequence

67018 reads, 213.0 reads per million, 36 experiments

agagugcucgaggacagcaagaaaaauGAGGGACUUUCAGGGGCAGCUGUguuuucugacucagucaUAAUGCCCCUAAAAAUCCUUAUUGuucuugcagugugcaucagg
...((((....(.((.(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))).))).)))))))).))))))).)).)))))....

Structure

-aga    ucga g  a       a        AC   C       -----    U   u 
    gugc    g ac gcaagaa aauGAGGG  UUU AGGGGCA     GCUG guu u
    ||||    | || ||||||| ||||||||  ||| |||||||     |||| |||  
    uacg    u ug cguucuu UUAUUCCU  AAA UCCCCGU     ugac cag c
ggac    ---- g  a       G        -A   A       AAUac    u   u 

Annotation confidence High

Genome context

chr19: 18731051-18731161 [-]

Mature chi-miR-365-5p

• Accession: MIMAT0058966
• Description: Capra hircus chi-miR-365-5p mature miRNA
• Sequence: 28 - GAGGGACUUUCAGGGGCAGCUGU - 50
• Evidence: experimental ; Illumina [1]

Mature chi-miR-365-3p

• Accession: MIMAT0036177
• Description: Capra hircus chi-miR-365-3p mature miRNA
• Sequence: 68 - UAAUGCCCCUAAAAAUCCUUAUUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40