Stem-loop chi-mir-34a

Accession

MI0030757

Description

Capra hircus chi-mir-34a precursor miRNA

Literature search

163 open access papers mention chi-mir-34a
(691 sentences)

Sequence

16443 reads, 50.0 reads per million, 36 experiments

ggccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUugugaguaauaaugcaggaagCAAUCAGCAAGUAUACUGCCCUagaagugcugcacguuguggg
..(((..(((((((((((((..(((((((((((.((((((((((....(((....)))....))))))))))))).))))))))..))))))))).))))...))).

Structure

gg   -gc    -         uU        -   A          guga   a 
  cca   ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUu    gua u
  |||   |||| |||||||||  |||||||| ||| ||||||||||    |||  
  ggu   gcac ucgugaaga  CCGUCAUA GAA CGACUAACga    cgu a
-g   guu    g         UC        U   -          agga   a 

Annotation confidence High

Genome context

chr16: 44326265-44326371 [+]

Mature chi-miR-34a-5p

• Accession: MIMAT0036166
• Description: Capra hircus chi-miR-34a-5p mature miRNA
• Sequence: 22 - UGGCAGUGUCUUAGCUGGUUGU - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-34a-3p

• Accession: MIMAT0058965
• Description: Capra hircus chi-miR-34a-3p mature miRNA
• Sequence: 65 - CAAUCAGCAAGUAUACUGCCCU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40