Stem-loop chi-mir-331

Accession

MI0030746

Description

Capra hircus chi-mir-331 precursor miRNA

Literature search

25 open access papers mention chi-mir-331
(93 sentences)

Sequence

39040 reads, 120.0 reads per million, 36 experiments

cacucccaaggaguuugguuuuguuuggguuuguUCUAGGUAUGGUCCCAGGGAUCccagaucaaaccagGCCCCUGGGCCUAUCCUAGAAccaaccuaaacucgcgcauc
.(((((...))))).((.....(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).))))))))).....))..

Structure

cacucccaaggaguu  guuuu         u        U    U       AUC  agau 
               ug     guuuggguu guUCUAGG AUGG CCCAGGG   cc    c
               ||     ||||||||| |||||||| |||| |||||||   ||    a
               ac     caaauccaa cAAGAUCC UAUC GGGUCCC   Gg    a
-------------cu  gcgcu         c        -    C       --C  acca 

Annotation confidence High

Genome context

chr5: 25579261-25579371 [+]

Mature chi-miR-331-5p

• Accession: MIMAT0036145
• Description: Capra hircus chi-miR-331-5p mature miRNA
• Sequence: 35 - UCUAGGUAUGGUCCCAGGGAUC - 56
• Evidence: experimental ; Illumina [1]

Mature chi-miR-331-3p

• Accession: MIMAT0036146
• Description: Capra hircus chi-miR-331-3p mature miRNA
• Sequence: 71 - GCCCCUGGGCCUAUCCUAGAA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40