Stem-loop chi-mir-329b

Accession

MI0030744

Description

Capra hircus chi-mir-329b precursor miRNA

Literature search

1 open access papers mention chi-mir-329b
(1 sentences)

Sequence

8243 reads, 26.0 reads per million, 36 experiments

cacugguguucuggucaguguucacccaugguaccugaagaGAGGUUUUCUGGGUUUCUGUUUcuuuaaugaggaugaAACACACCUGGUUAACCUCUUuuccaguaucaaaucccaucuugaa
....((((..(........)..))))..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..))))))..............

Structure

cacugguguucuggucaguguucaccca      cu           UU      UUC      u  aa 
                            ugguac  gaagaGAGGUU  CUGGGU   UGUUUc uu  u
                            ||||||  |||||||||||  ||||||   |||||| ||   
                            acuaug  cuuUUCUCCAA  GGUCCA   ACAAag ag  g
--------------aaguucuacccuaa      ac           UU      --C      u  ga 

Annotation confidence High

Genome context

chr21: 67105074-67105197 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-329b

Mature chi-miR-329b-5p

• Accession: MIMAT0058964
• Description: Capra hircus chi-miR-329b-5p mature miRNA
• Sequence: 42 - GAGGUUUUCUGGGUUUCUGUUU - 63
• Evidence: experimental ; Illumina [1]

Mature chi-miR-329b-3p

• Accession: MIMAT0036142
• Description: Capra hircus chi-miR-329b-3p mature miRNA
• Sequence: 79 - AACACACCUGGUUAACCUCUU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40