Stem-loop chi-mir-329a

Accession

MI0030743

Description

Capra hircus chi-mir-329a precursor miRNA

Literature search

1 open access papers mention chi-mir-329a
(1 sentences)

Sequence

1741 reads, 6.0 reads per million, 36 experiments

caguguaauuggugguacuugaggaGAGGUUUUCUAGGUCUCCGUUUCUuucaugaggaugaAACACACCUGGUUAACCUUUuuuccaguaucagaucccaccuugg
..(((..(((..(((((((.(((((((((((..((((((....(((((.(((....))).)))))..))))))..))))))))))).))))))))))..))).....

Structure

---ca   ua   gg       u           UU      CUCC     U   a 
     gug  auu  ugguacu gaggaGAGGUU  CUAGGU    GUUUC uuc u
     |||  |||  ||||||| |||||||||||  ||||||    ||||| |||  
     cac  uag  acuauga cuuuUUUCCAA  GGUCCA    CAAag agg g
gguuc   cc   --       c           UU      --CA     u   a 

Annotation confidence Not enough data

Genome context

chr21: 67105386-67105492 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-329a

Mature chi-miR-329a-5p

• Accession: MIMAT0036140
• Description: Capra hircus chi-miR-329a-5p mature miRNA
• Sequence: 26 - GAGGUUUUCUAGGUCUCCGUUUCU - 49
• Evidence: experimental ; Illumina [1]

Mature chi-miR-329a-3p

• Accession: MIMAT0036141
• Description: Capra hircus chi-miR-329a-3p mature miRNA
• Sequence: 63 - AACACACCUGGUUAACCUUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40