Stem-loop chi-mir-30d

Accession

MI0030734

Description

Capra hircus chi-mir-30d precursor miRNA

Literature search

45 open access papers mention chi-mir-30d
(138 sentences)

Sequence

5975460 reads, 18825.0 reads per million, 36 experiments

aagucuguuguUGUAAACAUCCCCGACUGGAAGCUGuuccacacagcuaagCUUUCAGUCAGAUGUUUGCUGCUaccggcu
.((((.((.((.(((((((((...(((((((((((..............))))))))))).))))))))).)).)).))))

Structure

a    u  u  U         CCC           Guucca 
 aguc gu gu GUAAACAUC   GACUGGAAGCU      c
 |||| || || |||||||||   |||||||||||       
 ucgg ca CG CGUUUGUAG   CUGACUUUCga      a
-    c  U  U         --A           aucgac 

Annotation confidence High

Genome context

chr14: 17697089-17697169 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-30d

Mature chi-miR-30d-5p

• Accession: MIMAT0058960
• Description: Capra hircus chi-miR-30d-5p mature miRNA
• Sequence: 12 - UGUAAACAUCCCCGACUGGAAGCUG - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-30d-3p

• Accession: MIMAT0036127
• Description: Capra hircus chi-miR-30d-3p mature miRNA
• Sequence: 52 - CUUUCAGUCAGAUGUUUGCUGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40