Stem-loop chi-mir-301b

Accession

MI0030730

Description

Capra hircus chi-mir-301b precursor miRNA

Literature search

4 open access papers mention chi-mir-301b
(6 sentences)

Sequence

2762 reads, 8.0 reads per million, 36 experiments

ccuccugcuggccgcaggugcucugacgagguugcacuacugugcuuugaggagCAGUGCAAUGAUAUUGUCAAAGCauccgggaccagccuuggag
.((((.(((((((.(.((((((.((((((.((((((((.....((((....))))))))))))....)))))).)))))).))).)))))...))))

Structure

c    --u     -  g a      c      ---g        acugu    u 
 cucc   gcugg cc c ggugcu ugacga    guugcacu     gcuu g
 ||||   ||||| || | |||||| ||||||    ||||||||     ||||  
 gagg   cgacc gg g cuaCGA ACUGUU    UAACGUGA     Cgag a
-    uuc     a  - c      A      AUAG        -----    g 

Annotation confidence Not enough data

Genome context

AJPT02103319.1: 195772-195868 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-301b

Mature chi-miR-301b-3p

• Accession: MIMAT0036120
• Description: Capra hircus chi-miR-301b-3p mature miRNA
• Sequence: 55 - CAGUGCAAUGAUAUUGUCAAAGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40