Stem-loop chi-mir-23b

Accession

MI0030712

Description

Capra hircus chi-mir-23b precursor miRNA

Literature search

39 open access papers mention chi-mir-23b
(137 sentences)

Sequence

658484 reads, 1972.0 reads per million, 36 experiments

gugcucuggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCACgcaaccacgacc
....(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).))..

Structure

gugc  -   c   u   --          -  C      gugacu 
    uc ugg ugc uGG  GUUCCUGGCA UG UGAUUU      u
    || ||| ||| |||  |||||||||| || ||||||       
    ag acc acg ACC  UAGGGACCGU AC ACUAaa      a
--cc  c   a   C   AU          U  -      auuaga 

Annotation confidence High

Genome context

chr8: 82818597-82818683 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-23b

Mature chi-miR-23b-5p

• Accession: MIMAT0036088
• Description: Capra hircus chi-miR-23b-5p mature miRNA
• Sequence: 16 - GGGUUCCUGGCAUGCUGAUUU - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-23b-3p

• Accession: MIMAT0036089
• Description: Capra hircus chi-miR-23b-3p mature miRNA
• Sequence: 53 - AUCACAUUGCCAGGGAUUACCAC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40