Stem-loop chi-mir-23a

Accession

MI0030711

Description

Capra hircus chi-mir-23a precursor miRNA

Literature search

71 open access papers mention chi-mir-23a
(438 sentences)

Sequence

290454 reads, 880.0 reads per million, 36 experiments

uggccggcugggguuccuggggaugggauuugcugccugucacaaAUCACAUUGCCAGGGAUUUCCaaccgaccc
.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).

Structure

u  c   c     -       g    g      c  c 
 gg cgg ugggg uuccugg gaug gauuug ug c
 || ||| ||||| ||||||| |||| |||||| || u
 cc gcc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 

Annotation confidence Not enough data

Genome context

chr7: 10075323-10075397 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-23a

Mature chi-miR-23a-3p

• Accession: MIMAT0036087
• Description: Capra hircus chi-miR-23a-3p mature miRNA
• Sequence: 46 - AUCACAUUGCCAGGGAUUUCC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40