Stem-loop chi-mir-197

Accession

MI0030673

Description

Capra hircus chi-mir-197 precursor miRNA

Literature search

13 open access papers mention chi-mir-197
(32 sentences)

Sequence

6409 reads, 19.0 reads per million, 36 experiments

ugcuggaaucugugcuccgggggcugugcCGGGUAGAGAGGGCAGUGGGAGGUaagagcucuucacccUUCACCACCUUCUCCACCCAGCagggccagcacacuuugg
..........((((((.....((((.(((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))).))))))))))......

Structure

ugcuggaauc      ccggg    g   C    A       CA     A   -   a 
          ugugcu     ggcu ugc GGGU GAGAGGG  GUGGG GGU aag g
          ||||||     |||| ||| |||| |||||||  ||||| ||| |||  
          acacga     ccgg aCG CCCA CUCUUCC  CACUU cca uuc c
----gguuuc      -----    g   A    C       AC     c   c   u 

Annotation confidence High

Genome context

AJPT02047839.1: 518157-518264 [+]

Mature chi-miR-197-5p

• Accession: MIMAT0036034
• Description: Capra hircus chi-miR-197-5p mature miRNA
• Sequence: 30 - CGGGUAGAGAGGGCAGUGGGAGGU - 53
• Evidence: experimental ; Illumina [1]

Mature chi-miR-197-3p

• Accession: MIMAT0036035
• Description: Capra hircus chi-miR-197-3p mature miRNA
• Sequence: 69 - UUCACCACCUUCUCCACCCAGC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40