Stem-loop chi-mir-150

Accession

MI0030638

Description

Capra hircus chi-mir-150 precursor miRNA

Literature search

71 open access papers mention chi-mir-150
(254 sentences)

Sequence

335442 reads, 1035.0 reads per million, 36 experiments

ucucuucucauggcccugUCUCCCAACCCUUGUACCAGUGugugucuugguccCUGGUACAGGUACGGGGAGGCagggaccuggggaucccagcagc
....((((((.(((((((((((((....((((((((((.(...........).))))))))))....))))))))))).))))))))..........

Structure

------ucuc      u  -           AACC          U ugug 
          uucuca gg cccugUCUCCC    CUUGUACCAG G    u
          |||||| || |||||||||||    |||||||||| |    c
          aggggu cc gggaCGGAGGG    GGACAUGGUC c    u
cgacgacccu      -  a           GCAU          c uggu 

Annotation confidence High

Genome context

chr18: 60483886-60483982 [-]

Mature chi-miR-150-5p

• Accession: MIMAT0035980
• Description: Capra hircus chi-miR-150-5p mature miRNA
• Sequence: 19 - UCUCCCAACCCUUGUACCAGUG - 40
• Evidence: experimental ; Illumina [1]

Mature chi-miR-150-3p

• Accession: MIMAT0058943
• Description: Capra hircus chi-miR-150-3p mature miRNA
• Sequence: 54 - CUGGUACAGGUACGGGGAGGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40