Stem-loop chi-mir-143

Accession

MI0030629

Description

Capra hircus chi-mir-143 precursor miRNA

Literature search

118 open access papers mention chi-mir-143
(535 sentences)

Sequence

48861399 reads, 150196.0 reads per million, 36 experiments

gcguccugucucccagccugaGGUGCAGUGCUGCAUCUCUGGUcaguugggagucUGAGAUGAAGCACUGUAGCUcgggaagggagaaguuguucuacagc
........((((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..)))))).(((((...)))))

Structure

------gcguccug      ag      G         G      U  -  ag 
              ucuccc  ccugaG UGCAGUGCU CAUCUC GG Uc  u
              ||||||  |||||| ||||||||| |||||| || ||   
              agaggg  gggcUC AUGUCACGA GUAGAG cu ag  u
cgacaucuuguuga      aa      G         A      U  g  gg 

Annotation confidence High

Genome context

chr7: 60508524-60508624 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-143

Mature chi-miR-143-5p

• Accession: MIMAT0035963
• Description: Capra hircus chi-miR-143-5p mature miRNA
• Sequence: 22 - GGUGCAGUGCUGCAUCUCUGGU - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-143-3p

• Accession: MIMAT0035964
• Description: Capra hircus chi-miR-143-3p mature miRNA
• Sequence: 56 - UGAGAUGAAGCACUGUAGCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40