miRBase entry: chi-mir-1388

Stem-loop chi-mir-1388


Accession
MI0030626
Description
Capra hircus chi-mir-1388 precursor miRNA
Gene family
MIPF0000805; mir-1388


Sequence

ccugggcagugccuucAGGACUGUCCAACCUGAGAAUggugagcauccagggacaAUCUCAGGUUCGUCAGCCCGCAaggugccguucccuc
...((((.(((((((..((.(((.(.(((((((((.((...............)).))))))))).).))).))..))))))).))))....

Structure
-ccu    a       cA  A   U C         A  gugagc 
    gggc gugccuu  GG CUG C AACCUGAGA Ug      a
    |||| |||||||  || ||| | ||||||||| ||      u
    cuug cguggaA  CC GAC G UUGGACUCU ac      c
cucc    c       CG  C   U C         A  agggac 


Annotation confidence Not enough data
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Genome context
chr13: 54634082-54634173 [+]

Database links

Mature chi-miR-1388-5p

Accession MIMAT0035958
Description Capra hircus chi-miR-1388-5p mature miRNA
Sequence 17 - AGGACUGUCCAACCUGAGAAU - 37
Evidence experimental
Illumina [1]

Mature chi-miR-1388-3p

Accession MIMAT0035959
Description Capra hircus chi-miR-1388-3p mature miRNA
Sequence 56 - AUCUCAGGUUCGUCAGCCCGCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40