Stem-loop chi-mir-135a

Accession

MI0030622

Description

Capra hircus chi-mir-135a precursor miRNA

Literature search

24 open access papers mention chi-mir-135a
(168 sentences)

Sequence

632 reads, 2.0 reads per million, 36 experiments

aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucacucaUAUAGGGAUUGGAGCCGUGGCgcacggcgggggca
.(.(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).))))))))).).

Structure

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g GGUGCCGAGG  UAGGGAUAUacu     g
a g         c C          -U            cacuc 

Annotation confidence High

Genome context

chr22: 50096622-50096711 [+]

Mature chi-miR-135a-5p

• Accession: MIMAT0035952
• Description: Capra hircus chi-miR-135a-5p mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-135a-3p

• Accession: MIMAT0058940
• Description: Capra hircus chi-miR-135a-3p mature miRNA
• Sequence: 56 - UAUAGGGAUUGGAGCCGUGGC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40