Stem-loop chi-mir-1296

Accession

MI0030613

Description

Capra hircus chi-mir-1296 precursor miRNA

Literature search

4 open access papers mention chi-mir-1296
(5 sentences)

Sequence

11025 reads, 33.0 reads per million, 36 experiments

ccuaccuaacugggUUAGGGCCCUGGCUCCAUCUCCuuuaggaaaaccuucuguggggAGUGGGGCUUUGACCCUAACCUagcugggcuguaacacugcugcauuu
....((((.(((((((((((....(((((((.((((((..((((....))))..)))))))))))))....))))))))))).)))).((((.......))))...

Structure

---------------ccua    a           CCCU       U      ua    a 
                   ccua cugggUUAGGG    GGCUCCA CUCCuu  ggaa a
                   |||| |||||||||||    ||||||| ||||||  ||||  
                   gggu gaUCCAAUCCC    UCGGGGU GAgggg  ucuu c
uuuacgucgucacaauguc    c           AGUU       -      ug    c 

Annotation confidence High

Genome context

chr28: 18831232-18831337 [-]

Mature chi-miR-1296-5p

• Accession: MIMAT0035938
• Description: Capra hircus chi-miR-1296-5p mature miRNA
• Sequence: 15 - UUAGGGCCCUGGCUCCAUCUCC - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1296-3p

• Accession: MIMAT0058937
• Description: Capra hircus chi-miR-1296-3p mature miRNA
• Sequence: 59 - AGUGGGGCUUUGACCCUAACCU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40