Stem-loop chi-mir-128

Accession

MI0030610

Description

Capra hircus chi-mir-128 precursor miRNA

Literature search

48 open access papers mention chi-mir-128
(313 sentences)

Sequence

505388 reads, 1583.0 reads per million, 36 experiments

uguuuaauauuuugcaauaauuggccuuguuccugagcuguuggauuCGGGGCCGUAGCACUGUCUGAgagguuuacauuucUCACAGUGAACCGGUCUCUUUUucagcugcuuccuggcuucuuuuuacuc
......................((((..(.....((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))))..))))...........

Structure

uguuuaauauuuugcaauaauu    uu uuccu    u      uuC       UAG      CU       u 
                      ggcc  g     gagc guugga   GGGGCCG   CACUGU  GAgaggu u
                      ||||  |     |||| ||||||   |||||||   ||||||  |||||||  
                      ucgg  c     uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
-----------cucauuuuucu    uc -----    u      UUU       CAA      --       c 

Annotation confidence High

Genome context

chr2: 65017076-65017207 [-]

Mature chi-miR-128-5p

• Accession: MIMAT0035933
• Description: Capra hircus chi-miR-128-5p mature miRNA
• Sequence: 48 - CGGGGCCGUAGCACUGUCUGA - 68
• Evidence: experimental ; Illumina [1]

Mature chi-miR-128-3p

• Accession: MIMAT0035934
• Description: Capra hircus chi-miR-128-3p mature miRNA
• Sequence: 83 - UCACAGUGAACCGGUCUCUUUU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40