miRBase entry: chi-mir-125a

Stem-loop chi-mir-125a


Accession
MI0030605
Description
Capra hircus chi-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention chi-mir-125a
(13 sentences)

Sequence

cgUCCCUGAGACCCUUUAACCUGUgaggacguccagggucACAGGUGAGGUUCUUGGGAGCcuggcguccggcc
..((((.((((.((((..((((((((...(.....)..)))))))))))).))))))))(((.((...))))).

Structure
-------------cg    U    C    UA        gga g 
               UCCC GAGA CCUU  ACCUGUga   c u
               |||| |||| ||||  ||||||||   | c
               AGGG UUCU GGAG  UGGACAcu   g c
ccggccugcggucCG    -    U    --        -gg a 


Annotation confidence Not enough data
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Genome context
chr18: 62076263-62076336 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from chi-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-125a-5p

Accession MIMAT0035923
Description Capra hircus chi-miR-125a-5p mature miRNA
Sequence 3 - UCCCUGAGACCCUUUAACCUGU - 24
Evidence experimental
Illumina [1]

Mature chi-miR-125a-3p

Accession MIMAT0035924
Description Capra hircus chi-miR-125a-3p mature miRNA
Sequence 41 - ACAGGUGAGGUUCUUGGGAGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40