Stem-loop chi-mir-10b

Accession

MI0030597

Description

Capra hircus chi-mir-10b precursor miRNA

Literature search

49 open access papers mention chi-mir-10b
(172 sentences)

Sequence

26307586 reads, 92744.0 reads per million, 36 experiments

caguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccucguagucaCAGAUUCGAUUCUAGGGGAAUauauggucgaugcaaaaacuucac
......(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))............

Structure

------caguaa     u        A    G     C          u g   c 
            cguug cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
            ||||| |||||||| |||| ||||| |||||||||| | |||  
            guagc gguauaUA GGGG AUCUU GCUUAGACac u aug u
cacuucaaaaac     u        A    -     A          - g   c 

Annotation confidence Medium

Genome context

chr2: 21871351-21871454 [-]

Mature chi-miR-10b-5p

• Accession: MIMAT0035913
• Description: Capra hircus chi-miR-10b-5p mature miRNA
• Sequence: 20 - UACCCUGUAGAACCGAAUUUGU - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-10b-3p

• Accession: MIMAT0035914
• Description: Capra hircus chi-miR-10b-3p mature miRNA
• Sequence: 60 - CAGAUUCGAUUCUAGGGGAAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40