Stem-loop chi-let-7b

Accession

MI0030580

Description

Capra hircus chi-let-7b precursor miRNA

Literature search

136 open access papers mention chi-let-7b
(543 sentences)

Sequence

1074065 reads, 3244.0 reads per million, 36 experiments

ggcggggUGAGGUAGUAGGUUGUGUGGUUUcaggguagugauguugcccccucggaagauaaCUAUACAACCUACUGCCUUCCUUGaggggcccagu
(((((((.(((((((((((((((((((((((.((((((.....))))))(....)..)).))))))))))))))))))))))))).....)))....

Structure

----   -----    U                     -  -------a      u 
    ggc     gggg GAGGUAGUAGGUUGUGUGGUU Uc        ggguag g
    |||     |||| ||||||||||||||||||||| ||        |||||| a
    ccg     UUCC UUCCGUCAUCCAACAUAUCaa ag        cccguu u
ugac   gggaG    -                     u  aaggcucc      g 

Annotation confidence High

Genome context

chr5: 118522775-118522871 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-let-7b

Mature chi-let-7b-5p

• Accession: MIMAT0035882
• Description: Capra hircus chi-let-7b-5p mature miRNA
• Sequence: 8 - UGAGGUAGUAGGUUGUGUGGUUU - 30
• Evidence: experimental ; Illumina [1]

Mature chi-let-7b-3p

• Accession: MIMAT0035883
• Description: Capra hircus chi-let-7b-3p mature miRNA
• Sequence: 63 - CUAUACAACCUACUGCCUUCCUUG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40