Stem-loop bra-MIR172d

Accession

MI0030577

Description

Brassica rapa bra-MIR172d precursor miRNA

Literature search

14 open access papers mention bra-MIR172d
(50 sentences)

Sequence

uaguugcagauGCAGCAUCAUUAAGAUUCACAagagaugugguuuucuuguuuucucgccucuugGGAAUCUUGAUGAUGCUGCAUcagcaacua
(((((((.(((((((((((((((((((((.((((((.((.((...........)).)).)))))).))))))))))))))))))))).)))))))

Structure

       a                     A      a  u  uuuu 
uaguugc gauGCAGCAUCAUUAAGAUUC CAagag ug gg    c
||||||| ||||||||||||||||||||| |||||| || ||    u
aucaacg cUACGUCGUAGUAGUUCUAAG guucuc gc cu    u
       a                     G      c  u  uuug 

Annotation confidence Not enough data

Genome context

chrA3: 4762900-4762994 [-]

Mature bra-miR172d-5p

• Accession: MIMAT0035876
• Description: Brassica rapa bra-miR172d-5p mature miRNA
• Sequence: 12 - GCAGCAUCAUUAAGAUUCACA - 32
• Evidence: experimental ; Illumina [1]

Mature bra-miR172d-3p

• Accession: MIMAT0035877
• Description: Brassica rapa bra-miR172d-3p mature miRNA
• Sequence: 66 - GGAAUCUUGAUGAUGCUGCAU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146