Stem-loop bra-MIR172c

Accession

MI0030575

Description

Brassica rapa bra-MIR172c precursor miRNA

Literature search

14 open access papers mention bra-MIR172c
(52 sentences)

Sequence

uucagacuuugaagcaguugcagucauuuuuugcuauuGCAUCAUCAUCAAGAUUCAGAaaucauauuccuugauggguucuccuucgagccugucuuuuuugguuugAGAAUCUUGAUGAUGCUGCAGcggcgauuaaauggcuuuuuuau
((((.....))))((....))((((((((.(((((.(((((.((((((((((((((..((((((........(((((((((......))))))))).....))))))..)))))))))))))).))))).)))))..)))))))).......

Structure

uucagacuuugaagcaguugc        -u     a     U              AG      uauuccuu         uc 
                     agucauuu  uugcu uuGCA CAUCAUCAAGAUUC  Aaauca        gauggguuc  c
                     ||||||||  ||||| ||||| ||||||||||||||  ||||||        |||||||||   
                     ucgguaaa  agcgg GACGU GUAGUAGUUCUAAG  uuuggu        cuguccgag  u
--------------uauuuuu        uu     c     C              Ag      ---uuuuu         cu 

Annotation confidence Not enough data

Genome context

chrA9: 27738162-27738313 [+]

Mature bra-miR172c-5p

• Accession: MIMAT0035872
• Description: Brassica rapa bra-miR172c-5p mature miRNA
• Sequence: 39 - GCAUCAUCAUCAAGAUUCAGA - 59
• Evidence: experimental ; Illumina [1]

Mature bra-miR172c-3p

• Accession: MIMAT0035873
• Description: Brassica rapa bra-miR172c-3p mature miRNA
• Sequence: 109 - AGAAUCUUGAUGAUGCUGCAG - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146