Stem-loop bra-MIR164e

Accession

MI0030574

Description

Brassica rapa bra-MIR164e precursor miRNA

Literature search

10 open access papers mention bra-MIR164e
(24 sentences)

Sequence

guaggugagaaccuccauguUGGAGAAGCAGGGCACGUGCAAaccaaaaaacaugaaaucuguuucauaugcuuugCACGUGCUCCCCUCCUCCAACaugagcuccucaccauu
...((((((...(((.(((((((((.((..(((((((((((((.((..(((((.......)))))....)).)))))))))))))..)).))))))))))))...))))))...

Structure

gua      aac   c         A  CA             c  --aa     ug 
   ggugag   cuc auguUGGAG AG  GGGCACGUGCAAa ca    aaaca  a
   ||||||   ||| ||||||||| ||  ||||||||||||| ||    |||||  a
   ccacuc   gag uaCAACCUC UC  CUCGUGCACguuu gu    uuugu  a
uua      cuc   -         C  CC             c  auac     cu 

Annotation confidence Not enough data

Genome context

chrA1: 25366674-25366787 [-]

Mature bra-miR164e-5p

• Accession: MIMAT0035870
• Description: Brassica rapa bra-miR164e-5p mature miRNA
• Sequence: 21 - UGGAGAAGCAGGGCACGUGCAA - 42
• Evidence: experimental ; Illumina [1]

Mature bra-miR164e-3p

• Accession: MIMAT0035871
• Description: Brassica rapa bra-miR164e-3p mature miRNA
• Sequence: 77 - CACGUGCUCCCCUCCUCCAAC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146