Stem-loop bra-MIR164c

Accession

MI0030573

Description

Brassica rapa bra-MIR164c precursor miRNA

Literature search

10 open access papers mention bra-MIR164c
(24 sentences)

Sequence

aacacuugcUGGAGAAGCAGGGCACGUGCGaacuaaugagagaucugugcauguugaucauauuuuugCACGUGUUCUACUACUCCAACac
......((.(((((.((.((((((((((((((...((((..(((........)))..))))...)))))))))))))).)).))))).)).

Structure

aacacu  c     A  C              cua    ga   cug 
      ug UGGAG AG AGGGCACGUGCGaa   auga  gau   u
      || ||||| || ||||||||||||||   ||||  |||    
      aC ACCUC UC UCUUGUGCACguuu   uacu  uug   g
-----c  A     A  A              uua    ag   uac 

Annotation confidence Low

Genome context

chrA9: 2025610-2025700 [-]

Mature bra-miR164c-5p

• Accession: MIMAT0035868
• Description: Brassica rapa bra-miR164c-5p mature miRNA
• Sequence: 10 - UGGAGAAGCAGGGCACGUGCG - 30
• Evidence: experimental ; Illumina [1]

Mature bra-miR164c-3p

• Accession: MIMAT0035869
• Description: Brassica rapa bra-miR164c-3p mature miRNA
• Sequence: 69 - CACGUGUUCUACUACUCCAAC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146