Stem-loop bra-MIR403

Accession

MI0030568

Description

Brassica rapa bra-MIR403 precursor miRNA

Literature search

2 open access papers mention bra-MIR403
(2 sentences)

Sequence

agagaagagucauauuacaUGUUUUGUGCGUGAAUCUAAUUcguaugcucauguaguaauccuaucuuguuguuggaUUAGAUUCACGCACAAACUCGuaaucugucuuuu
....(((((.((.(((((..((((.((((((((((((((((((...((....((((.....))))...))...))))))))))))))))))))))..))))).)).)))))

Structure

agag     u  u     aU    U                  uau  ucau    u 
    aagag ca auuac  GUUU GUGCGUGAAUCUAAUUcg   gc    guag a
    ||||| || |||||  |||| ||||||||||||||||||   ||    |||| a
    uuuuc gu uaauG  CAAA CACGCACUUAGAUUaggu   ug    uauc u
----     u  c     CU    -                  ugu  -uuc    c 

Annotation confidence Not enough data

Genome context

chrA5: 266420-266530 [-]

Mature bra-miR403-5p

• Accession: MIMAT0035858
• Description: Brassica rapa bra-miR403-5p mature miRNA
• Sequence: 20 - UGUUUUGUGCGUGAAUCUAAUU - 41
• Evidence: experimental ; Illumina [1]

Mature bra-miR403-3p

• Accession: MIMAT0035859
• Description: Brassica rapa bra-miR403-3p mature miRNA
• Sequence: 78 - UUAGAUUCACGCACAAACUCG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146