Stem-loop bra-MIR395b

Accession

MI0030562

Description

Brassica rapa bra-MIR395b precursor miRNA

Literature search

7 open access papers mention bra-MIR395b
(16 sentences)

Sequence

auguuuccuagaGUUCCUCUGAGCACUUCAUUGgagauaccauuuauuuucuaucaaaauguauuccaCUGAAGUGUUUGGGGGAACUCcugga
.....(((..((((((((((((((((((((.(((((.(((.((((...........)))))))))))).))))))))))))))))))))..)))

Structure

auguu   ua                    U     a   c    auuu 
     ucc  gaGUUCCUCUGAGCACUUCA UGgag uac auuu    u
     |||  |||||||||||||||||||| ||||| ||| ||||    c
     agg  CUCAAGGGGGUUUGUGAAGU accuu aug uaaa    u
-----   uc                    C     -   -    acua 

Annotation confidence Not enough data

Genome context

chrA7: 18563029-18563122 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bra-MIR395b

Mature bra-miR395b-5p

• Accession: MIMAT0035846
• Description: Brassica rapa bra-miR395b-5p mature miRNA
• Sequence: 13 - GUUCCUCUGAGCACUUCAUUG - 33
• Evidence: experimental ; Illumina [1]

Mature bra-miR395b-3p

• Accession: MIMAT0035847
• Description: Brassica rapa bra-miR395b-3p mature miRNA
• Sequence: 69 - CUGAAGUGUUUGGGGGAACUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146