Stem-loop bra-MIR168a

Accession

MI0030557

Description

Brassica rapa bra-MIR168a precursor miRNA

Literature search

8 open access papers mention bra-MIR168a
(54 sentences)

Sequence

uuacggcggccucugacUCGCUUGGUGCAGGUCGGGAAcugauuggcugacaccgccacguggcuuuccaugguuggcuugugagcagggaucggauCCCGCCUUGUAUCAAGUGAAUccgaguccgacguga
(((((.(((.(((.((.((((((((((((((.(((((.((((((.(((.(((..(((((((((....)))))..)))).))).)))...)))))).))))).)))))))))))))).)).))).))).)))))

Structure

     g   c   u  c              U     A      --g   g   cc    --     c 
uuacg cgg cuc ga UCGCUUGGUGCAGG CGGGA cugauu   gcu aca  gcca  cgugg u
||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  |||||  
agugc gcc gag cU AGUGAACUAUGUUC GCCCu ggcuag   cga ugu  cggu  guacc u
     a   u   c  A              C     a      gga   g   -u    ug     u 

Annotation confidence Not enough data

Genome context

chrA6: 25084101-25084233 [+]

Mature bra-miR168a-5p

• Accession: MIMAT0035836
• Description: Brassica rapa bra-miR168a-5p mature miRNA
• Sequence: 18 - UCGCUUGGUGCAGGUCGGGAA - 38
• Evidence: experimental ; Illumina [1]

Mature bra-miR168a-3p

• Accession: MIMAT0035837
• Description: Brassica rapa bra-miR168a-3p mature miRNA
• Sequence: 98 - CCCGCCUUGUAUCAAGUGAAU - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146